Nic was a postdoc in the Zeller lab from May 2022 to December 2024. After that he joined Nassos Typas’ group at EMBL as a Senior Bioinformatician.
Statistical modelling and meta-analyses
Spatial community analysis
Gut microbial secondary metabolism
Microbiome profiling
Intratumoral microbiome
Gut dysbiosis / disease associations
Cayman: Profiling carbohydrate-active enzymes in metagenomes
SIAMCAT: Statistical Inference of Associations between Microbial Communities And host phenoTypes
mOTUs: Microbial abundance, activity and population genomic profiling with mOTUs
Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status
[PREPRINT] Long-term fasting remodels gut microbial metabolism and host metabolism
[PREPRINT] Unraveling interindividual differences and functional consequences of gut microbial metabolism of immunosuppressants
[PREPRINT] Large-scale computational analyses of gut microbial CAZyme repertoires enabled by Cayman
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
The gut microbiome in solid organ transplantation
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation