Alessio Milanese

PhD Student and Bridging Postdoc

Now Senior Associate Scientist at dsm-firmenich

Alessio Milanese was a PhD student in the lab from 2016-09-01 to 2020-10-31 and later a part-time visiting postdoc (with main affiliation in the Sunagawa lab, ETH Zurich, CH) from 2020-11-01 to 2021-10-31. He is now a Senior Associate Scientist at dsm-firmenich (NL).

Tools

mOTUs: Microbial abundance, activity and population genomic profiling with mOTUs

Papers

Systematic analysis of drug combinations against Gram-positive bacteria

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Biosynthetic potential of the global ocean microbiome

Critical Assessment of Metagenome Interpretation: the second round of challenges

Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial

Unravelling the collateral damage of antibiotics on gut bacteria

mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities

[PREPRINT] Accurate de novo identification of biosynthetic gene clusters with GECCO